PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097956.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 476aa    MW: 53058.8 Da    PI: 5.2876
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097956.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.9e-35221122101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d++++e++sws+n+nsfvv+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++
  XP_010097956.1  22 FLLKTYDMVDDSATDEIVSWSSNKNSFVVWNPPEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQKHLLKN 107
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_010097956.1 108 IHRRK 112
                     ***98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-3518111IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.0E-3818111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5918111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.5E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEAAHAGGGG GGGGGSGGPA PFLLKTYDMV DDSATDEIVS WSSNKNSFVV WNPPEFSRLL  60
LPTYFKHNNF SSFIRQLNTY GFRKIDPERW EFANEDFVKD QKHLLKNIHR RKPIHSHSNP  120
QCSLVDPERA ALDEEIEKLS REKLVLEANI ARCKQQLTAK HQLENVTQRV NGIERRQDNL  180
QSFLEKAVQD PAFIDYVIER IESMDLAYNK KRRLPEVDYS QPAVDDSFVE NQSNSRAEFG  240
NIFHRDFSNK LRLELSPAVS DINPVSNSNQ SSNEEGETTQ KKISEGELRG TRTRTEGLFL  300
APEPLELSDT GTSFGFKMDS SLSIKPPTSG SPRLHSLQPN LTSCEEGDSR ISCQLNLTLA  360
SLPSQVNNIP YSAGMLSESR FVANTKESDI VATPKKKNLA DEGKPLSAPQ EAANNQAAAV  420
KVNDVFWEQF LTERPGCSDN EEASSNYRTS TYDEQSDGRL GHGISKNAKN VEQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-22911117129Heat shock factor protein 1
5d5v_B6e-22911117129Heat shock factor protein 1
5d5v_D6e-22911117129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR1321931e-116KR132193.1 Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097956.10.0Heat stress transcription factor A-5
SwissprotQ94BZ51e-161HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLW9RUK30.0W9RUK3_9R
STRINGGLYMA05G28460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-154HSF family protein